- Agriculture
- Arts and Culture
- Cabinet and Confidential
- Command Area Development Authority (CADA)
- Co-operation
- Commerce and Industries
- Invest in Manipur
- Consumer Affairs, Food and Public Distribution
- Development of ST & SC
- Economics & Statistics
- Education
- Election Department
- Finance
- Directorate of Treasuries and Account
- Directorate of Local Fund Audit
- Directorate of Lotteries
- Directorate of Small Savings
- Directorate of Institutional Finance
- Directorate of MIS
- Taxation
- Finance Commission
- Excise
- GAD
- Printing and Stationery
- Manipur Bhawan, New Delhi
- Fisheries
- Forest and Environment
- Horticulture and Soil Conservation
- HOME
- Manipur Police
- State CID
- Manipur Rifles
- Home Guards
- Manipur Police Wireless
- CMTW
- MPTC
- Forensic Science Laboratory
- Manipur Police Housing Corporation
- Manipur Traffic Police
- Manipur Fire Service
- Narcotics & Affairs of Border
- Imphal Municipal Corporation (IMC)
- Irrigation and Flood Control (IFCD)
- Information Technology
- Information and Public Relations
- Labour
- Employment Exchange
- Craftsman Training
- Law and Legislative Affairs
- MAHUD
- Manipur Development Society
- Manipur Urban Development Agency (MUDA)
- Medical, Health and Family Welfare
- Medical & Health Service
- Family Welfare
- National Rural Health Mission
- Minor Irrigation Department
- Minorities and Other Backward Classes
- Personnel and Administrative Reforms
- Planning
- Power
- Public Health Engineering Department
- Public Works Department
- Relief and Disaster Management
- Revenue
- Rural Development and Panchayati Raj
- Science and Technology
- Sericulture
- Social Welfare
- State Academy of Training(SAT)
- Town Planning
- Tourism
- Transport
- Veterinary and Animal Husbandry
- Vigilance
- Youth Affairs and Sports